{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {
    "papermill": {
     "duration": 0.090332,
     "end_time": "2020-04-28T12:16:27.987316",
     "exception": false,
     "start_time": "2020-04-28T12:16:27.896984",
     "status": "completed"
    },
    "tags": []
   },
   "source": [
    "# COVID-19 status in Chile\n",
    "> COVID-19 overview in Chile\n",
    "\n",
    "- toc: true\n",
    "- badges: true\n",
    "- comments: true\n",
    "- author: Alonso Silva Allende\n",
    "- categories: [jupyter]\n",
    "- image: images/Chile-total-confirmed-cases.png"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:28.153150Z",
     "iopub.status.busy": "2020-04-28T12:16:28.152543Z",
     "iopub.status.idle": "2020-04-28T12:16:28.577700Z",
     "shell.execute_reply": "2020-04-28T12:16:28.576813Z"
    },
    "papermill": {
     "duration": 0.509291,
     "end_time": "2020-04-28T12:16:28.577900",
     "exception": false,
     "start_time": "2020-04-28T12:16:28.068609",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "import numpy as np\n",
    "import pandas as pd\n",
    "import altair as alt"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:28.743578Z",
     "iopub.status.busy": "2020-04-28T12:16:28.742830Z",
     "iopub.status.idle": "2020-04-28T12:16:28.744682Z",
     "shell.execute_reply": "2020-04-28T12:16:28.745193Z"
    },
    "papermill": {
     "duration": 0.086639,
     "end_time": "2020-04-28T12:16:28.745326",
     "exception": false,
     "start_time": "2020-04-28T12:16:28.658687",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "from IPython.display import display, Markdown, display_html, HTML"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:28.916116Z",
     "iopub.status.busy": "2020-04-28T12:16:28.915491Z",
     "iopub.status.idle": "2020-04-28T12:16:28.925854Z",
     "shell.execute_reply": "2020-04-28T12:16:28.926339Z"
    },
    "papermill": {
     "duration": 0.098105,
     "end_time": "2020-04-28T12:16:28.926470",
     "exception": false,
     "start_time": "2020-04-28T12:16:28.828365",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'2020-05-06'"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#hide\n",
    "update_date = pd.to_datetime('today') - pd.offsets.Hour(19)\n",
    "today = update_date.strftime('%Y-%m-%d')\n",
    "today"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:29.090437Z",
     "iopub.status.busy": "2020-04-28T12:16:29.089838Z",
     "iopub.status.idle": "2020-04-28T12:16:29.092044Z",
     "shell.execute_reply": "2020-04-28T12:16:29.092605Z"
    },
    "papermill": {
     "duration": 0.086545,
     "end_time": "2020-04-28T12:16:29.092733",
     "exception": false,
     "start_time": "2020-04-28T12:16:29.006188",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'2020-04-29'"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#hide\n",
    "date_one_week_ago = (update_date - pd.offsets.Day(7)).strftime('%Y-%m-%d')\n",
    "date_one_week_ago"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:29.260413Z",
     "iopub.status.busy": "2020-04-28T12:16:29.259792Z",
     "iopub.status.idle": "2020-04-28T12:16:29.261976Z",
     "shell.execute_reply": "2020-04-28T12:16:29.262451Z"
    },
    "papermill": {
     "duration": 0.088391,
     "end_time": "2020-04-28T12:16:29.262577",
     "exception": false,
     "start_time": "2020-04-28T12:16:29.174186",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [
    {
     "data": {
      "text/markdown": [
       "Updated on May 06, 2020."
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "#hide_input\n",
    "display(Markdown(f\"Updated on {update_date.strftime('%B %d, %Y')}.\"))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:29.428170Z",
     "iopub.status.busy": "2020-04-28T12:16:29.427421Z",
     "iopub.status.idle": "2020-04-28T12:16:29.534325Z",
     "shell.execute_reply": "2020-04-28T12:16:29.533620Z"
    },
    "papermill": {
     "duration": 0.191721,
     "end_time": "2020-04-28T12:16:29.534478",
     "exception": false,
     "start_time": "2020-04-28T12:16:29.342757",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "casos_raw = pd.read_csv(\n",
    "    \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto3/CasosTotalesCumulativo.csv\",\n",
    "    index_col='Region')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:29.706319Z",
     "iopub.status.busy": "2020-04-28T12:16:29.705167Z",
     "iopub.status.idle": "2020-04-28T12:16:29.951376Z",
     "shell.execute_reply": "2020-04-28T12:16:29.950737Z"
    },
    "papermill": {
     "duration": 0.330996,
     "end_time": "2020-04-28T12:16:29.951502",
     "exception": false,
     "start_time": "2020-04-28T12:16:29.620506",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "s = \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto4/\" \\\n",
    "+ today + \"-CasosConfirmados-totalRegional.csv\"\n",
    "deaths_raw = pd.read_csv(s, index_col='Region')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:30.125941Z",
     "iopub.status.busy": "2020-04-28T12:16:30.125334Z",
     "iopub.status.idle": "2020-04-28T12:16:30.278134Z",
     "shell.execute_reply": "2020-04-28T12:16:30.277066Z"
    },
    "papermill": {
     "duration": 0.242196,
     "end_time": "2020-04-28T12:16:30.278343",
     "exception": false,
     "start_time": "2020-04-28T12:16:30.036147",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "s = \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto4/\" \\\n",
    "+ date_one_week_ago + \"-CasosConfirmados-totalRegional.csv\"\n",
    "deaths_one_week_ago = pd.read_csv(s, index_col='Region')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:30.478687Z",
     "iopub.status.busy": "2020-04-28T12:16:30.477969Z",
     "iopub.status.idle": "2020-04-28T12:16:30.496723Z",
     "shell.execute_reply": "2020-04-28T12:16:30.496063Z"
    },
    "papermill": {
     "duration": 0.10577,
     "end_time": "2020-04-28T12:16:30.496872",
     "exception": false,
     "start_time": "2020-04-28T12:16:30.391102",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "tests_raw = pd.read_csv(\n",
    "    'https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto7/PCR.csv',\n",
    "    index_col='Region')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:30.661457Z",
     "iopub.status.busy": "2020-04-28T12:16:30.660852Z",
     "iopub.status.idle": "2020-04-28T12:16:30.680972Z",
     "shell.execute_reply": "2020-04-28T12:16:30.680434Z"
    },
    "papermill": {
     "duration": 0.103544,
     "end_time": "2020-04-28T12:16:30.681086",
     "exception": false,
     "start_time": "2020-04-28T12:16:30.577542",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data_table = pd.DataFrame()\n",
    "data_table[\"Region\"] = casos_raw[today].drop(\"Total\").reset_index()[\"Region\"]\n",
    "data_table[\"Confirmed cases\"] = casos_raw[today].drop(\"Total\").reset_index()[today]\n",
    "data_table[\"Confirmed cases per 100,000 people\"] = np.round(100000*(casos_raw[today]/tests_raw['Poblacion']).drop('Total'), decimals=1).values\n",
    "data_table[\"Confirmed deaths\"] = deaths_raw[\"Fallecidos\"].drop(\"Total\").values\n",
    "data_table[\"Confirmed deaths per 100.000 people\"] = \\\n",
    "np.round(100000*deaths_raw['Fallecidos'].drop('Total')/(tests_raw['Poblacion'].values), decimals=1).values"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:30.847944Z",
     "iopub.status.busy": "2020-04-28T12:16:30.846680Z",
     "iopub.status.idle": "2020-04-28T12:16:30.848604Z",
     "shell.execute_reply": "2020-04-28T12:16:30.849077Z"
    },
    "papermill": {
     "duration": 0.089057,
     "end_time": "2020-04-28T12:16:30.849204",
     "exception": false,
     "start_time": "2020-04-28T12:16:30.760147",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "total_confirmed = casos_raw.iloc[-1,-1]\n",
    "total_deaths = deaths_raw.loc[\"Total\", \"Fallecidos\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:31.015540Z",
     "iopub.status.busy": "2020-04-28T12:16:31.014859Z",
     "iopub.status.idle": "2020-04-28T12:16:31.019869Z",
     "shell.execute_reply": "2020-04-28T12:16:31.019266Z"
    },
    "papermill": {
     "duration": 0.089985,
     "end_time": "2020-04-28T12:16:31.019983",
     "exception": false,
     "start_time": "2020-04-28T12:16:30.929998",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "total_confirmed_one_week_ago = casos_raw.iloc[-1,-8]\n",
    "total_deaths_one_week_ago = deaths_one_week_ago.loc[\"Total\", \"Fallecidos\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:31.184353Z",
     "iopub.status.busy": "2020-04-28T12:16:31.183124Z",
     "iopub.status.idle": "2020-04-28T12:16:31.185010Z",
     "shell.execute_reply": "2020-04-28T12:16:31.185483Z"
    },
    "papermill": {
     "duration": 0.086319,
     "end_time": "2020-04-28T12:16:31.185611",
     "exception": false,
     "start_time": "2020-04-28T12:16:31.099292",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "diff_cases = total_confirmed-total_confirmed_one_week_ago\n",
    "diff_deaths = total_deaths-total_deaths_one_week_ago"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:31.359979Z",
     "iopub.status.busy": "2020-04-28T12:16:31.359371Z",
     "iopub.status.idle": "2020-04-28T12:16:31.362256Z",
     "shell.execute_reply": "2020-04-28T12:16:31.361743Z"
    },
    "papermill": {
     "duration": 0.097559,
     "end_time": "2020-04-28T12:16:31.362365",
     "exception": false,
     "start_time": "2020-04-28T12:16:31.264806",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "total_confirmed = '{:,}'.format(total_confirmed) #.replace(',', '.')\n",
    "total_deaths = '{:,}'.format(total_deaths) #.replace(',', '.')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:31.526463Z",
     "iopub.status.busy": "2020-04-28T12:16:31.525851Z",
     "iopub.status.idle": "2020-04-28T12:16:31.527553Z",
     "shell.execute_reply": "2020-04-28T12:16:31.528061Z"
    },
    "papermill": {
     "duration": 0.086965,
     "end_time": "2020-04-28T12:16:31.528190",
     "exception": false,
     "start_time": "2020-04-28T12:16:31.441225",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "diff_cases = '{:,}'.format(diff_cases) #.replace(',', '.')\n",
    "diff_deaths = '{:,}'.format(diff_deaths) #.replace(',', '.')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:31.691841Z",
     "iopub.status.busy": "2020-04-28T12:16:31.691225Z",
     "iopub.status.idle": "2020-04-28T12:16:31.693561Z",
     "shell.execute_reply": "2020-04-28T12:16:31.694080Z"
    },
    "papermill": {
     "duration": 0.086837,
     "end_time": "2020-04-28T12:16:31.694210",
     "exception": false,
     "start_time": "2020-04-28T12:16:31.607373",
     "status": "completed"
    },
    "scrolled": false,
    "tags": []
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<p style=\"color:#3361ff;\"><span style=\"font-weight:bold;\">Confirmed cases:</span> 23,048 (+7,913 since 7 days ago)</p><p style=\"color:#FF3F3F;\"><span style=\"font-weight:bold;\">Confirmed deaths:</span> 281 (+65 since 7 days ago)</p>"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "execution_count": 16,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#hide_input\n",
    "HTML(f'<p style=\"color:#3361ff;\"><span style=\"font-weight:bold;\">Confirmed cases:</span> {total_confirmed} (+{diff_cases} since 7 days ago)</p><p style=\"color:#FF3F3F;\"><span style=\"font-weight:bold;\">Confirmed deaths:</span> {total_deaths} (+{diff_deaths} since 7 days ago)</p>')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:31.864465Z",
     "iopub.status.busy": "2020-04-28T12:16:31.863859Z",
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    "scrolled": false,
    "tags": []
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   "outputs": [
    {
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       "            text-align:  right;\n",
       "            background-color:  #fee9df;\n",
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       "        }</style><table id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27a\" ><caption>Statistics by region: Confirmed cases and confirmed deaths</caption><thead>    <tr>        <th class=\"col_heading level0 col0\" >Region</th>        <th class=\"col_heading level0 col1\" >Confirmed cases</th>        <th class=\"col_heading level0 col2\" >Confirmed cases per 100,000 people</th>        <th class=\"col_heading level0 col3\" >Confirmed deaths</th>        <th class=\"col_heading level0 col4\" >Confirmed deaths per 100.000 people</th>    </tr></thead><tbody>\n",
       "                <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow0_col0\" class=\"data row0 col0\" >Arica y Parinacota</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow0_col1\" class=\"data row0 col1\" >318</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow0_col2\" class=\"data row0 col2\" >123.600000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow0_col3\" class=\"data row0 col3\" >5</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow0_col4\" class=\"data row0 col4\" >2.000000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow1_col0\" class=\"data row1 col0\" >Tarapacá</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow1_col1\" class=\"data row1 col1\" >339</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow1_col2\" class=\"data row1 col2\" >134.300000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow1_col3\" class=\"data row1 col3\" >1</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow1_col4\" class=\"data row1 col4\" >0.300000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow2_col0\" class=\"data row2 col0\" >Antofagasta</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow2_col1\" class=\"data row2 col1\" >855</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow2_col2\" class=\"data row2 col2\" >126.100000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow2_col3\" class=\"data row2 col3\" >7</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow2_col4\" class=\"data row2 col4\" >1.000000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow3_col0\" class=\"data row3 col0\" >Atacama</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow3_col1\" class=\"data row3 col1\" >80</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow3_col2\" class=\"data row3 col2\" >25.400000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow3_col3\" class=\"data row3 col3\" >0</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow3_col4\" class=\"data row3 col4\" >0.000000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow4_col0\" class=\"data row4 col0\" >Coquimbo</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow4_col1\" class=\"data row4 col1\" >97</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow4_col2\" class=\"data row4 col2\" >6.500000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow4_col3\" class=\"data row4 col3\" >0</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow4_col4\" class=\"data row4 col4\" >0.000000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow5_col0\" class=\"data row5 col0\" >Valparaíso</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow5_col1\" class=\"data row5 col1\" >716</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow5_col2\" class=\"data row5 col2\" >47.400000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow5_col3\" class=\"data row5 col3\" >16</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow5_col4\" class=\"data row5 col4\" >0.800000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow6_col0\" class=\"data row6 col0\" >Metropolitana</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow6_col1\" class=\"data row6 col1\" >15582</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow6_col2\" class=\"data row6 col2\" >11.600000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow6_col3\" class=\"data row6 col3\" >150</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow6_col4\" class=\"data row6 col4\" >1.800000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow7_col0\" class=\"data row7 col0\" >O’Higgins</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow7_col1\" class=\"data row7 col1\" >145</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow7_col2\" class=\"data row7 col2\" >60.700000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow7_col3\" class=\"data row7 col3\" >3</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow7_col4\" class=\"data row7 col4\" >0.300000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow8_col0\" class=\"data row8 col0\" >Maule</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow8_col1\" class=\"data row8 col1\" >408</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow8_col2\" class=\"data row8 col2\" >49.300000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow8_col3\" class=\"data row8 col3\" >13</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow8_col4\" class=\"data row8 col4\" >1.100000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow9_col0\" class=\"data row9 col0\" >Ñuble</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow9_col1\" class=\"data row9 col1\" >791</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow9_col2\" class=\"data row9 col2\" >458.600000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow9_col3\" class=\"data row9 col3\" >17</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow9_col4\" class=\"data row9 col4\" >3.300000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow10_col0\" class=\"data row10 col0\" >Biobío</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow10_col1\" class=\"data row10 col1\" >789</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow10_col2\" class=\"data row10 col2\" >36.000000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow10_col3\" class=\"data row10 col3\" >8</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow10_col4\" class=\"data row10 col4\" >0.500000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow11_col0\" class=\"data row11 col0\" >Araucanía</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow11_col1\" class=\"data row11 col1\" >1362</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow11_col2\" class=\"data row11 col2\" >191.800000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow11_col3\" class=\"data row11 col3\" >36</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow11_col4\" class=\"data row11 col4\" >3.500000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow12_col0\" class=\"data row12 col0\" >Los Ríos</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow12_col1\" class=\"data row12 col1\" >200</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow12_col2\" class=\"data row12 col2\" >14.600000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow12_col3\" class=\"data row12 col3\" >4</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow12_col4\" class=\"data row12 col4\" >1.000000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow13_col0\" class=\"data row13 col0\" >Los Lagos</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow13_col1\" class=\"data row13 col1\" >541</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow13_col2\" class=\"data row13 col2\" >88.600000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow13_col3\" class=\"data row13 col3\" >10</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow13_col4\" class=\"data row13 col4\" >1.100000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow14_col0\" class=\"data row14 col0\" >Aysén</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow14_col1\" class=\"data row14 col1\" >7</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow14_col2\" class=\"data row14 col2\" >36.500000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow14_col3\" class=\"data row14 col3\" >0</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow14_col4\" class=\"data row14 col4\" >0.000000</td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                                <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow15_col0\" class=\"data row15 col0\" >Magallanes</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow15_col1\" class=\"data row15 col1\" >818</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow15_col2\" class=\"data row15 col2\" >154.600000</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow15_col3\" class=\"data row15 col3\" >11</td>\n",
       "                        <td id=\"T_5db6c2ae_8fef_11ea_9f8f_60f81dc8f27arow15_col4\" class=\"data row15 col4\" >6.200000</td>\n",
       "            </tr>\n",
       "    </tbody></table>"
      ],
      "text/plain": [
       "<pandas.io.formats.style.Styler at 0x12105f910>"
      ]
     },
     "execution_count": 17,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#hide_input\n",
    "(data_table.style.set_properties(**{'text-align': 'right'}).background_gradient(cmap='Reds').hide_index()).set_caption(\n",
    "    'Statistics by region: Confirmed cases and confirmed deaths')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "papermill": {
     "duration": 0.082645,
     "end_time": "2020-04-28T12:16:32.457166",
     "exception": false,
     "start_time": "2020-04-28T12:16:32.374521",
     "status": "completed"
    },
    "tags": []
   },
   "source": [
    "# Evolution of total confirmed cases by region"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:32.630112Z",
     "iopub.status.busy": "2020-04-28T12:16:32.629494Z",
     "iopub.status.idle": "2020-04-28T12:16:32.649508Z",
     "shell.execute_reply": "2020-04-28T12:16:32.648939Z"
    },
    "papermill": {
     "duration": 0.110939,
     "end_time": "2020-04-28T12:16:32.649626",
     "exception": false,
     "start_time": "2020-04-28T12:16:32.538687",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data_raw = pd.read_csv(\n",
    "    \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto3/CasosTotalesCumulativo.csv\",\n",
    "    index_col='Region')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:32.819320Z",
     "iopub.status.busy": "2020-04-28T12:16:32.818663Z",
     "iopub.status.idle": "2020-04-28T12:16:32.820978Z",
     "shell.execute_reply": "2020-04-28T12:16:32.820464Z"
    },
    "papermill": {
     "duration": 0.089772,
     "end_time": "2020-04-28T12:16:32.821088",
     "exception": false,
     "start_time": "2020-04-28T12:16:32.731316",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data_raw = data_raw.drop(\"Total\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:32.993705Z",
     "iopub.status.busy": "2020-04-28T12:16:32.988020Z",
     "iopub.status.idle": "2020-04-28T12:16:33.523491Z",
     "shell.execute_reply": "2020-04-28T12:16:33.522359Z"
    },
    "papermill": {
     "duration": 0.619644,
     "end_time": "2020-04-28T12:16:33.523625",
     "exception": false,
     "start_time": "2020-04-28T12:16:32.903981",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data = pd.DataFrame()\n",
    "i = 0\n",
    "for date in data_raw.keys():\n",
    "    for n, region in enumerate(data_raw.index):\n",
    "        data[i] = date, region, data_raw[date].loc[region], n\n",
    "        i += 1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:33.701677Z",
     "iopub.status.busy": "2020-04-28T12:16:33.700563Z",
     "iopub.status.idle": "2020-04-28T12:16:33.705651Z",
     "shell.execute_reply": "2020-04-28T12:16:33.706168Z"
    },
    "papermill": {
     "duration": 0.100896,
     "end_time": "2020-04-28T12:16:33.706357",
     "exception": false,
     "start_time": "2020-04-28T12:16:33.605461",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data_raw = data_raw.reset_index()\n",
    "regiones = data_raw['Region'].values\n",
    "data = data.T\n",
    "data = data.rename(columns={0: \"date\", 1: \"region\", 2: \"casos\", 3: \"codigo region\"})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:33.876387Z",
     "iopub.status.busy": "2020-04-28T12:16:33.875759Z",
     "iopub.status.idle": "2020-04-28T12:16:33.878181Z",
     "shell.execute_reply": "2020-04-28T12:16:33.878755Z"
    },
    "papermill": {
     "duration": 0.090828,
     "end_time": "2020-04-28T12:16:33.878888",
     "exception": false,
     "start_time": "2020-04-28T12:16:33.788060",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data[\"casos\"] = data[\"casos\"].astype(int)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:34.053128Z",
     "iopub.status.busy": "2020-04-28T12:16:34.048039Z",
     "iopub.status.idle": "2020-04-28T12:16:34.162754Z",
     "shell.execute_reply": "2020-04-28T12:16:34.163451Z"
    },
    "papermill": {
     "duration": 0.201012,
     "end_time": "2020-04-28T12:16:34.163626",
     "exception": false,
     "start_time": "2020-04-28T12:16:33.962614",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [
    {
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{\"date\": \"2020-04-26\", \"region\": \"Metropolitana\", \"casos\": 7496, \"codigo region\": 6}, {\"date\": \"2020-04-26\", \"region\": \"O\\u2019Higgins\", \"casos\": 92, \"codigo region\": 7}, {\"date\": \"2020-04-26\", \"region\": \"Maule\", \"casos\": 354, \"codigo region\": 8}, {\"date\": \"2020-04-26\", \"region\": \"\\u00d1uble\", \"casos\": 731, \"codigo region\": 9}, {\"date\": \"2020-04-26\", \"region\": \"Biob\\u00edo\", \"casos\": 703, \"codigo region\": 10}, {\"date\": \"2020-04-26\", \"region\": \"Araucan\\u00eda\", \"casos\": 1216, \"codigo region\": 11}, {\"date\": \"2020-04-26\", \"region\": \"Los R\\u00edos\", \"casos\": 178, \"codigo region\": 12}, {\"date\": \"2020-04-26\", \"region\": \"Los Lagos\", \"casos\": 473, \"codigo region\": 13}, {\"date\": \"2020-04-26\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-04-26\", \"region\": \"Magallanes\", \"casos\": 668, \"codigo region\": 15}, {\"date\": \"2020-04-27\", \"region\": \"Arica y Parinacota\", \"casos\": 265, \"codigo region\": 0}, {\"date\": \"2020-04-27\", \"region\": \"Tarapac\\u00e1\", \"casos\": 164, \"codigo region\": 1}, {\"date\": \"2020-04-27\", \"region\": \"Antofagasta\", \"casos\": 457, \"codigo region\": 2}, {\"date\": \"2020-04-27\", \"region\": \"Atacama\", \"casos\": 35, \"codigo region\": 3}, {\"date\": \"2020-04-27\", \"region\": \"Coquimbo\", \"casos\": 74, \"codigo region\": 4}, {\"date\": \"2020-04-27\", \"region\": \"Valpara\\u00edso\", \"casos\": 485, \"codigo region\": 5}, {\"date\": \"2020-04-27\", \"region\": \"Metropolitana\", \"casos\": 7858, \"codigo region\": 6}, {\"date\": \"2020-04-27\", \"region\": \"O\\u2019Higgins\", \"casos\": 94, \"codigo region\": 7}, {\"date\": \"2020-04-27\", \"region\": \"Maule\", \"casos\": 363, \"codigo region\": 8}, {\"date\": \"2020-04-27\", \"region\": \"\\u00d1uble\", \"casos\": 741, \"codigo region\": 9}, {\"date\": \"2020-04-27\", \"region\": \"Biob\\u00edo\", \"casos\": 706, \"codigo region\": 10}, {\"date\": \"2020-04-27\", \"region\": \"Araucan\\u00eda\", \"casos\": 1236, \"codigo region\": 11}, {\"date\": \"2020-04-27\", \"region\": \"Los R\\u00edos\", \"casos\": 180, \"codigo region\": 12}, {\"date\": \"2020-04-27\", \"region\": \"Los Lagos\", \"casos\": 477, \"codigo region\": 13}, {\"date\": \"2020-04-27\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-04-27\", \"region\": \"Magallanes\", \"casos\": 671, \"codigo region\": 15}, {\"date\": \"2020-04-28\", \"region\": \"Arica y Parinacota\", \"casos\": 268, \"codigo region\": 0}, {\"date\": \"2020-04-28\", \"region\": \"Tarapac\\u00e1\", \"casos\": 169, \"codigo region\": 1}, {\"date\": \"2020-04-28\", \"region\": \"Antofagasta\", \"casos\": 481, \"codigo region\": 2}, {\"date\": \"2020-04-28\", \"region\": \"Atacama\", \"casos\": 35, \"codigo region\": 3}, {\"date\": \"2020-04-28\", \"region\": \"Coquimbo\", \"casos\": 74, \"codigo region\": 4}, {\"date\": \"2020-04-28\", \"region\": \"Valpara\\u00edso\", \"casos\": 493, \"codigo region\": 5}, {\"date\": \"2020-04-28\", \"region\": \"Metropolitana\", \"casos\": 8300, \"codigo region\": 6}, {\"date\": \"2020-04-28\", \"region\": \"O\\u2019Higgins\", \"casos\": 97, \"codigo region\": 7}, {\"date\": \"2020-04-28\", \"region\": \"Maule\", \"casos\": 384, \"codigo region\": 8}, {\"date\": \"2020-04-28\", \"region\": \"\\u00d1uble\", \"casos\": 747, \"codigo region\": 9}, {\"date\": \"2020-04-28\", \"region\": \"Biob\\u00edo\", \"casos\": 709, \"codigo region\": 10}, {\"date\": \"2020-04-28\", \"region\": \"Araucan\\u00eda\", \"casos\": 1251, \"codigo region\": 11}, {\"date\": \"2020-04-28\", \"region\": \"Los R\\u00edos\", \"casos\": 180, \"codigo region\": 12}, {\"date\": \"2020-04-28\", \"region\": \"Los Lagos\", \"casos\": 477, \"codigo region\": 13}, {\"date\": \"2020-04-28\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-04-28\", \"region\": \"Magallanes\", \"casos\": 693, \"codigo region\": 15}, {\"date\": \"2020-04-29\", \"region\": \"Arica y Parinacota\", \"casos\": 272, \"codigo region\": 0}, {\"date\": \"2020-04-29\", \"region\": \"Tarapac\\u00e1\", \"casos\": 183, \"codigo region\": 1}, {\"date\": \"2020-04-29\", \"region\": \"Antofagasta\", \"casos\": 514, \"codigo region\": 2}, {\"date\": \"2020-04-29\", \"region\": \"Atacama\", \"casos\": 42, \"codigo region\": 3}, {\"date\": \"2020-04-29\", \"region\": \"Coquimbo\", \"casos\": 76, \"codigo region\": 4}, {\"date\": \"2020-04-29\", \"region\": \"Valpara\\u00edso\", \"casos\": 526, \"codigo region\": 5}, {\"date\": \"2020-04-29\", \"region\": \"Metropolitana\", \"casos\": 8889, \"codigo region\": 6}, {\"date\": \"2020-04-29\", \"region\": \"O\\u2019Higgins\", \"casos\": 104, \"codigo region\": 7}, {\"date\": \"2020-04-29\", \"region\": \"Maule\", \"casos\": 392, \"codigo region\": 8}, {\"date\": \"2020-04-29\", \"region\": \"\\u00d1uble\", \"casos\": 761, \"codigo region\": 9}, {\"date\": \"2020-04-29\", \"region\": \"Biob\\u00edo\", \"casos\": 719, \"codigo region\": 10}, {\"date\": \"2020-04-29\", \"region\": \"Araucan\\u00eda\", \"casos\": 1273, \"codigo region\": 11}, {\"date\": \"2020-04-29\", \"region\": \"Los R\\u00edos\", \"casos\": 182, \"codigo region\": 12}, {\"date\": \"2020-04-29\", \"region\": \"Los Lagos\", \"casos\": 481, \"codigo region\": 13}, {\"date\": \"2020-04-29\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-04-29\", \"region\": \"Magallanes\", \"casos\": 714, \"codigo region\": 15}, {\"date\": \"2020-04-30\", \"region\": \"Arica y Parinacota\", \"casos\": 279, \"codigo region\": 0}, {\"date\": \"2020-04-30\", \"region\": \"Tarapac\\u00e1\", \"casos\": 198, \"codigo region\": 1}, {\"date\": \"2020-04-30\", \"region\": \"Antofagasta\", \"casos\": 546, \"codigo region\": 2}, {\"date\": \"2020-04-30\", \"region\": \"Atacama\", \"casos\": 43, \"codigo region\": 3}, {\"date\": \"2020-04-30\", \"region\": \"Coquimbo\", \"casos\": 76, \"codigo region\": 4}, {\"date\": \"2020-04-30\", \"region\": \"Valpara\\u00edso\", \"casos\": 559, \"codigo region\": 5}, {\"date\": \"2020-04-30\", \"region\": \"Metropolitana\", \"casos\": 9625, \"codigo region\": 6}, {\"date\": \"2020-04-30\", \"region\": \"O\\u2019Higgins\", \"casos\": 108, \"codigo region\": 7}, {\"date\": \"2020-04-30\", \"region\": \"Maule\", \"casos\": 393, \"codigo region\": 8}, {\"date\": \"2020-04-30\", \"region\": \"\\u00d1uble\", \"casos\": 768, \"codigo region\": 9}, {\"date\": \"2020-04-30\", \"region\": \"Biob\\u00edo\", \"casos\": 727, \"codigo region\": 10}, {\"date\": \"2020-04-30\", \"region\": \"Araucan\\u00eda\", \"casos\": 1293, \"codigo region\": 11}, {\"date\": \"2020-04-30\", \"region\": \"Los R\\u00edos\", \"casos\": 189, \"codigo region\": 12}, {\"date\": \"2020-04-30\", \"region\": \"Los Lagos\", \"casos\": 487, \"codigo region\": 13}, {\"date\": \"2020-04-30\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-04-30\", \"region\": \"Magallanes\", \"casos\": 725, \"codigo region\": 15}, {\"date\": \"2020-05-01\", \"region\": \"Arica y Parinacota\", \"casos\": 297, \"codigo region\": 0}, {\"date\": \"2020-05-01\", \"region\": \"Tarapac\\u00e1\", \"casos\": 200, \"codigo region\": 1}, {\"date\": \"2020-05-01\", \"region\": \"Antofagasta\", \"casos\": 589, \"codigo region\": 2}, {\"date\": \"2020-05-01\", \"region\": \"Atacama\", \"casos\": 43, \"codigo region\": 3}, {\"date\": \"2020-05-01\", \"region\": \"Coquimbo\", \"casos\": 77, \"codigo region\": 4}, {\"date\": \"2020-05-01\", \"region\": \"Valpara\\u00edso\", \"casos\": 568, \"codigo region\": 5}, {\"date\": \"2020-05-01\", \"region\": \"Metropolitana\", \"casos\": 10516, \"codigo region\": 6}, {\"date\": \"2020-05-01\", \"region\": \"O\\u2019Higgins\", \"casos\": 109, \"codigo region\": 7}, {\"date\": \"2020-05-01\", \"region\": \"Maule\", \"casos\": 394, \"codigo region\": 8}, {\"date\": \"2020-05-01\", \"region\": \"\\u00d1uble\", \"casos\": 768, \"codigo region\": 9}, {\"date\": \"2020-05-01\", \"region\": \"Biob\\u00edo\", \"casos\": 729, \"codigo region\": 10}, {\"date\": \"2020-05-01\", \"region\": \"Araucan\\u00eda\", \"casos\": 1295, \"codigo region\": 11}, {\"date\": \"2020-05-01\", \"region\": \"Los R\\u00edos\", \"casos\": 189, \"codigo region\": 12}, {\"date\": \"2020-05-01\", \"region\": \"Los Lagos\", \"casos\": 501, \"codigo region\": 13}, {\"date\": \"2020-05-01\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-05-01\", \"region\": \"Magallanes\", \"casos\": 726, \"codigo region\": 15}, {\"date\": \"2020-05-02\", \"region\": \"Arica y Parinacota\", \"casos\": 307, \"codigo region\": 0}, {\"date\": \"2020-05-02\", \"region\": \"Tarapac\\u00e1\", \"casos\": 212, \"codigo region\": 1}, {\"date\": \"2020-05-02\", \"region\": \"Antofagasta\", \"casos\": 679, \"codigo region\": 2}, {\"date\": \"2020-05-02\", \"region\": \"Atacama\", \"casos\": 59, \"codigo region\": 3}, {\"date\": \"2020-05-02\", \"region\": \"Coquimbo\", \"casos\": 78, \"codigo region\": 4}, {\"date\": \"2020-05-02\", \"region\": \"Valpara\\u00edso\", \"casos\": 614, \"codigo region\": 5}, {\"date\": \"2020-05-02\", \"region\": \"Metropolitana\", \"casos\": 11661, \"codigo region\": 6}, {\"date\": \"2020-05-02\", \"region\": \"O\\u2019Higgins\", \"casos\": 120, \"codigo region\": 7}, {\"date\": \"2020-05-02\", \"region\": \"Maule\", \"casos\": 396, \"codigo region\": 8}, {\"date\": \"2020-05-02\", \"region\": \"\\u00d1uble\", \"casos\": 776, \"codigo region\": 9}, {\"date\": \"2020-05-02\", \"region\": \"Biob\\u00edo\", \"casos\": 751, \"codigo region\": 10}, {\"date\": \"2020-05-02\", \"region\": \"Araucan\\u00eda\", \"casos\": 1314, \"codigo region\": 11}, {\"date\": \"2020-05-02\", \"region\": \"Los R\\u00edos\", \"casos\": 196, \"codigo region\": 12}, {\"date\": \"2020-05-02\", \"region\": \"Los Lagos\", \"casos\": 513, \"codigo region\": 13}, {\"date\": \"2020-05-02\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-05-02\", \"region\": \"Magallanes\", \"casos\": 752, \"codigo region\": 15}, {\"date\": \"2020-05-03\", \"region\": \"Arica y Parinacota\", \"casos\": 308, \"codigo region\": 0}, {\"date\": \"2020-05-03\", \"region\": \"Tarapac\\u00e1\", \"casos\": 272, \"codigo region\": 1}, {\"date\": \"2020-05-03\", \"region\": \"Antofagasta\", \"casos\": 740, \"codigo region\": 2}, {\"date\": \"2020-05-03\", \"region\": \"Atacama\", \"casos\": 67, \"codigo region\": 3}, {\"date\": \"2020-05-03\", \"region\": \"Coquimbo\", \"casos\": 88, \"codigo region\": 4}, {\"date\": \"2020-05-03\", \"region\": \"Valpara\\u00edso\", \"casos\": 638, \"codigo region\": 5}, {\"date\": \"2020-05-03\", \"region\": \"Metropolitana\", \"casos\": 12656, \"codigo region\": 6}, {\"date\": \"2020-05-03\", \"region\": \"O\\u2019Higgins\", \"casos\": 125, \"codigo region\": 7}, {\"date\": \"2020-05-03\", \"region\": \"Maule\", \"casos\": 397, \"codigo region\": 8}, {\"date\": \"2020-05-03\", \"region\": \"\\u00d1uble\", \"casos\": 786, \"codigo region\": 9}, {\"date\": \"2020-05-03\", \"region\": \"Biob\\u00edo\", \"casos\": 759, \"codigo region\": 10}, {\"date\": \"2020-05-03\", \"region\": \"Araucan\\u00eda\", \"casos\": 1328, \"codigo region\": 11}, {\"date\": \"2020-05-03\", \"region\": \"Los R\\u00edos\", \"casos\": 198, \"codigo region\": 12}, {\"date\": \"2020-05-03\", \"region\": \"Los Lagos\", \"casos\": 517, \"codigo region\": 13}, {\"date\": \"2020-05-03\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-05-03\", \"region\": \"Magallanes\", \"casos\": 777, \"codigo region\": 15}, {\"date\": \"2020-05-04\", \"region\": \"Arica y Parinacota\", \"casos\": 308, \"codigo region\": 0}, {\"date\": \"2020-05-04\", \"region\": \"Tarapac\\u00e1\", \"casos\": 295, \"codigo region\": 1}, {\"date\": \"2020-05-04\", \"region\": \"Antofagasta\", \"casos\": 760, \"codigo region\": 2}, {\"date\": \"2020-05-04\", \"region\": \"Atacama\", \"casos\": 70, \"codigo region\": 3}, {\"date\": \"2020-05-04\", \"region\": \"Coquimbo\", \"casos\": 91, \"codigo region\": 4}, {\"date\": \"2020-05-04\", \"region\": \"Valpara\\u00edso\", \"casos\": 656, \"codigo region\": 5}, {\"date\": \"2020-05-04\", \"region\": \"Metropolitana\", \"casos\": 13528, \"codigo region\": 6}, {\"date\": \"2020-05-04\", \"region\": \"O\\u2019Higgins\", \"casos\": 131, \"codigo region\": 7}, {\"date\": \"2020-05-04\", \"region\": \"Maule\", \"casos\": 399, \"codigo region\": 8}, {\"date\": \"2020-05-04\", \"region\": \"\\u00d1uble\", \"casos\": 787, \"codigo region\": 9}, {\"date\": \"2020-05-04\", \"region\": \"Biob\\u00edo\", \"casos\": 762, \"codigo region\": 10}, {\"date\": \"2020-05-04\", \"region\": \"Araucan\\u00eda\", \"casos\": 1331, \"codigo region\": 11}, {\"date\": \"2020-05-04\", \"region\": \"Los R\\u00edos\", \"casos\": 199, \"codigo region\": 12}, {\"date\": \"2020-05-04\", \"region\": \"Los Lagos\", \"casos\": 524, \"codigo region\": 13}, {\"date\": \"2020-05-04\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-05-04\", \"region\": \"Magallanes\", \"casos\": 795, \"codigo region\": 15}, {\"date\": \"2020-05-05\", \"region\": \"Arica y Parinacota\", \"casos\": 315, \"codigo region\": 0}, {\"date\": \"2020-05-05\", \"region\": \"Tarapac\\u00e1\", \"casos\": 322, \"codigo region\": 1}, {\"date\": \"2020-05-05\", \"region\": \"Antofagasta\", \"casos\": 811, \"codigo region\": 2}, {\"date\": \"2020-05-05\", \"region\": \"Atacama\", \"casos\": 78, \"codigo region\": 3}, {\"date\": \"2020-05-05\", \"region\": \"Coquimbo\", \"casos\": 97, \"codigo region\": 4}, {\"date\": \"2020-05-05\", \"region\": \"Valpara\\u00edso\", \"casos\": 687, \"codigo region\": 5}, {\"date\": \"2020-05-05\", \"region\": \"Metropolitana\", \"casos\": 14707, \"codigo region\": 6}, {\"date\": \"2020-05-05\", \"region\": \"O\\u2019Higgins\", \"casos\": 136, \"codigo region\": 7}, {\"date\": \"2020-05-05\", \"region\": \"Maule\", \"casos\": 408, \"codigo region\": 8}, {\"date\": \"2020-05-05\", \"region\": \"\\u00d1uble\", \"casos\": 789, \"codigo region\": 9}, {\"date\": \"2020-05-05\", \"region\": \"Biob\\u00edo\", \"casos\": 774, \"codigo region\": 10}, {\"date\": \"2020-05-05\", \"region\": \"Araucan\\u00eda\", \"casos\": 1352, \"codigo region\": 11}, {\"date\": \"2020-05-05\", \"region\": \"Los R\\u00edos\", \"casos\": 199, \"codigo region\": 12}, {\"date\": \"2020-05-05\", \"region\": \"Los Lagos\", \"casos\": 525, \"codigo region\": 13}, {\"date\": \"2020-05-05\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-05-05\", \"region\": \"Magallanes\", \"casos\": 809, \"codigo region\": 15}, {\"date\": \"2020-05-06\", \"region\": \"Arica y Parinacota\", \"casos\": 318, \"codigo region\": 0}, {\"date\": \"2020-05-06\", \"region\": \"Tarapac\\u00e1\", \"casos\": 339, \"codigo region\": 1}, {\"date\": \"2020-05-06\", \"region\": \"Antofagasta\", \"casos\": 855, \"codigo region\": 2}, {\"date\": \"2020-05-06\", \"region\": \"Atacama\", \"casos\": 80, \"codigo region\": 3}, {\"date\": \"2020-05-06\", \"region\": \"Coquimbo\", \"casos\": 97, \"codigo region\": 4}, {\"date\": \"2020-05-06\", \"region\": \"Valpara\\u00edso\", \"casos\": 716, \"codigo region\": 5}, {\"date\": \"2020-05-06\", \"region\": \"Metropolitana\", \"casos\": 15582, \"codigo region\": 6}, {\"date\": \"2020-05-06\", \"region\": \"O\\u2019Higgins\", \"casos\": 145, \"codigo region\": 7}, {\"date\": \"2020-05-06\", \"region\": \"Maule\", \"casos\": 408, \"codigo region\": 8}, {\"date\": \"2020-05-06\", \"region\": \"\\u00d1uble\", \"casos\": 791, \"codigo region\": 9}, {\"date\": \"2020-05-06\", \"region\": \"Biob\\u00edo\", \"casos\": 789, \"codigo region\": 10}, {\"date\": \"2020-05-06\", \"region\": \"Araucan\\u00eda\", \"casos\": 1362, \"codigo region\": 11}, {\"date\": \"2020-05-06\", \"region\": \"Los R\\u00edos\", \"casos\": 200, \"codigo region\": 12}, {\"date\": \"2020-05-06\", \"region\": \"Los Lagos\", \"casos\": 541, \"codigo region\": 13}, {\"date\": \"2020-05-06\", \"region\": \"Ays\\u00e9n\", \"casos\": 7, \"codigo region\": 14}, {\"date\": \"2020-05-06\", \"region\": \"Magallanes\", \"casos\": 818, \"codigo region\": 15}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.HConcatChart(...)"
      ]
     },
     "execution_count": 23,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#hide_input\n",
    "input_dropdown = alt.binding_select(options=data['region'].unique())\n",
    "selection1 = alt.selection_single(fields=['region'], bind=input_dropdown, name=' ')\n",
    "selection2 = alt.selection_multi(fields=['region'], on='mouseover')\n",
    "color = alt.condition(selection1 | selection2,\n",
    "                    alt.Color('region:N', scale=alt.Scale(scheme='tableau20'), legend=None),\n",
    "                    alt.value('lightgray'))\n",
    "\n",
    "chart = alt.Chart(data).mark_bar().encode(\n",
    "    x=alt.X('date:O', axis=alt.Axis(title='Date')),\n",
    "    y=alt.Y('casos', axis=alt.Axis(title='Confirmed cases')),\n",
    "    color=color,\n",
    "    tooltip=['date', 'region', 'casos'],\n",
    "    order=alt.Order(\n",
    "    # Sort the segments of the bars by this field\n",
    "    'codigo region',\n",
    "    sort='descending'\n",
    "    )\n",
    ").properties(\n",
    "    title='COVID-19 in Chile: Total confirmed cases by región'\n",
    ").add_selection(\n",
    "    selection1, selection2\n",
    ").transform_filter(\n",
    "    selection1\n",
    ")\n",
    "\n",
    "legend = alt.Chart(data).mark_point().encode(\n",
    "    y=alt.Y('region:N', axis=alt.Axis(orient='right'), sort=regiones),\n",
    "    color=color\n",
    ").add_selection(\n",
    "    selection1, selection2\n",
    ")\n",
    "\n",
    "chart.properties(width=600, height=400) | legend"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "papermill": {
     "duration": 0.084384,
     "end_time": "2020-04-28T12:16:40.109530",
     "exception": false,
     "start_time": "2020-04-28T12:16:40.025146",
     "status": "completed"
    },
    "tags": []
   },
   "source": [
    "Data source: [Science Ministry](https://github.com/MinCiencia/Datos-COVID19)."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "papermill": {
     "duration": 0.082735,
     "end_time": "2020-04-28T12:16:34.330018",
     "exception": false,
     "start_time": "2020-04-28T12:16:34.247283",
     "status": "completed"
    },
    "tags": []
   },
   "source": [
    "# Evolution of total confirmed deaths by region"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:34.501390Z",
     "iopub.status.busy": "2020-04-28T12:16:34.500754Z",
     "iopub.status.idle": "2020-04-28T12:16:34.607378Z",
     "shell.execute_reply": "2020-04-28T12:16:34.606437Z"
    },
    "papermill": {
     "duration": 0.194542,
     "end_time": "2020-04-28T12:16:34.607572",
     "exception": false,
     "start_time": "2020-04-28T12:16:34.413030",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data = pd.DataFrame()\n",
    "data_raw = pd.read_csv(\n",
    "    \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto4/2020-03-24-CasosConfirmados-totalRegional.csv\",\n",
    "    index_col='Region')\n",
    "data['2020-03-24'] = data_raw['Fallecidos']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:34.779550Z",
     "iopub.status.busy": "2020-04-28T12:16:34.778883Z",
     "iopub.status.idle": "2020-04-28T12:16:34.781076Z",
     "shell.execute_reply": "2020-04-28T12:16:34.780561Z"
    },
    "papermill": {
     "duration": 0.090551,
     "end_time": "2020-04-28T12:16:34.781187",
     "exception": false,
     "start_time": "2020-04-28T12:16:34.690636",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "first_death_date = '2020-03-24'\n",
    "total_days = (pd.to_datetime(today)-pd.to_datetime(first_death_date)).days"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:34.955763Z",
     "iopub.status.busy": "2020-04-28T12:16:34.955128Z",
     "iopub.status.idle": "2020-04-28T12:16:38.267570Z",
     "shell.execute_reply": "2020-04-28T12:16:38.266653Z"
    },
    "papermill": {
     "duration": 3.402871,
     "end_time": "2020-04-28T12:16:38.267760",
     "exception": false,
     "start_time": "2020-04-28T12:16:34.864889",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "for i in np.arange(total_days+1):\n",
    "  date = (pd.to_datetime(first_death_date)+pd.DateOffset(i)).strftime('%Y-%m-%d')\n",
    "  s = \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto4/\" + date + \"-CasosConfirmados-totalRegional.csv\"\n",
    "  data_by_date = pd.read_csv(s)\n",
    "  if 'Fallecidos' in data_by_date.columns:\n",
    "    data[date] = data_by_date[\"Fallecidos\"].values\n",
    "  elif 'Casos fallecidos' in data_by_date.columns:\n",
    "    data[date] = data_by_date[\"Casos fallecidos\"].values\n",
    "  else:\n",
    "    data[date] = data_by_date[\" Casos fallecidos\"].values"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:38.444360Z",
     "iopub.status.busy": "2020-04-28T12:16:38.443550Z",
     "iopub.status.idle": "2020-04-28T12:16:38.445281Z",
     "shell.execute_reply": "2020-04-28T12:16:38.445820Z"
    },
    "papermill": {
     "duration": 0.094073,
     "end_time": "2020-04-28T12:16:38.446041",
     "exception": false,
     "start_time": "2020-04-28T12:16:38.351968",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data = data.drop(\"Total\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:38.623718Z",
     "iopub.status.busy": "2020-04-28T12:16:38.622846Z",
     "iopub.status.idle": "2020-04-28T12:16:38.957040Z",
     "shell.execute_reply": "2020-04-28T12:16:38.957547Z"
    },
    "papermill": {
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     "end_time": "2020-04-28T12:16:38.957695",
     "exception": false,
     "start_time": "2020-04-28T12:16:38.530061",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "new_data = pd.DataFrame()\n",
    "i = 0\n",
    "for date in data.keys():\n",
    "    for n, region in enumerate(data.index):\n",
    "        new_data[i] = date, region, data[date].loc[region], n\n",
    "        i += 1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:39.139159Z",
     "iopub.status.busy": "2020-04-28T12:16:39.138494Z",
     "iopub.status.idle": "2020-04-28T12:16:39.144086Z",
     "shell.execute_reply": "2020-04-28T12:16:39.143563Z"
    },
    "papermill": {
     "duration": 0.097874,
     "end_time": "2020-04-28T12:16:39.144196",
     "exception": false,
     "start_time": "2020-04-28T12:16:39.046322",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data = data.reset_index()\n",
    "regiones = data['Region'].values\n",
    "new_data = new_data.T\n",
    "new_data = new_data.rename(columns={0: \"date\", 1: \"region\", 2: \"fallecidos\", 3: \"codigo region\"})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:39.321415Z",
     "iopub.status.busy": "2020-04-28T12:16:39.320809Z",
     "iopub.status.idle": "2020-04-28T12:16:39.324018Z",
     "shell.execute_reply": "2020-04-28T12:16:39.323507Z"
    },
    "papermill": {
     "duration": 0.095476,
     "end_time": "2020-04-28T12:16:39.324127",
     "exception": false,
     "start_time": "2020-04-28T12:16:39.228651",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "new_data[\"fallecidos\"] = new_data[\"fallecidos\"].astype(int)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:39.522109Z",
     "iopub.status.busy": "2020-04-28T12:16:39.506652Z",
     "iopub.status.idle": "2020-04-28T12:16:39.582068Z",
     "shell.execute_reply": "2020-04-28T12:16:39.582881Z"
    },
    "papermill": {
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     "end_time": "2020-04-28T12:16:39.583116",
     "exception": false,
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     "status": "completed"
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    "tags": []
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   "outputs": [
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\"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-05-06\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 16, \"codigo region\": 5}, {\"date\": \"2020-05-06\", \"region\": \"Metropolitana\", \"fallecidos\": 150, \"codigo region\": 6}, {\"date\": \"2020-05-06\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 3, \"codigo region\": 7}, {\"date\": \"2020-05-06\", \"region\": \"Maule\", \"fallecidos\": 13, \"codigo region\": 8}, {\"date\": \"2020-05-06\", \"region\": \"\\u00d1uble\", \"fallecidos\": 17, \"codigo region\": 9}, {\"date\": \"2020-05-06\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 8, \"codigo region\": 10}, {\"date\": \"2020-05-06\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 36, \"codigo region\": 11}, {\"date\": \"2020-05-06\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 4, \"codigo region\": 12}, {\"date\": \"2020-05-06\", \"region\": \"Los Lagos\", \"fallecidos\": 10, \"codigo region\": 13}, {\"date\": \"2020-05-06\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-06\", \"region\": \"Magallanes\", \"fallecidos\": 11, \"codigo region\": 15}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.HConcatChart(...)"
      ]
     },
     "execution_count": 31,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#hide_input\n",
    "\n",
    "input_dropdown = alt.binding_select(options=new_data['region'].unique())\n",
    "selection1 = alt.selection_single(fields=['region'], bind=input_dropdown, name=' ')\n",
    "selection2 = alt.selection_multi(fields=['region'], on='mouseover')\n",
    "\n",
    "color = alt.condition(selection1 | selection2,\n",
    "                    alt.Color('region:N', scale=alt.Scale(scheme='tableau20'), legend=None),\n",
    "                    alt.value('lightgray'))\n",
    "\n",
    "bars = alt.Chart(new_data).mark_bar().encode(\n",
    "    x=alt.X('date:O', axis=alt.Axis(title='Date')),\n",
    "    y=alt.Y('fallecidos', axis=alt.Axis(title='Confirmed deaths')),\n",
    "    color=color,\n",
    "    tooltip=['date', 'region', 'fallecidos'],\n",
    "    order=alt.Order(\n",
    "    # Sort the segments of the bars by this field\n",
    "    'codigo region',\n",
    "    sort='descending'\n",
    "    )\n",
    "    ).properties(\n",
    "    title='COVID-19 in Chile: Total confirmed deaths by region'\n",
    ").add_selection(\n",
    "    selection1, selection2\n",
    ").transform_filter(\n",
    "    selection1\n",
    ")\n",
    "\n",
    "legend = alt.Chart(new_data).mark_point().encode(\n",
    "    y=alt.Y('region:N', axis=alt.Axis(orient='right'), sort=regiones),\n",
    "    color=color\n",
    ").add_selection(\n",
    "    selection1, selection2\n",
    ")\n",
    "\n",
    "bars.properties(width=600, height=400) | legend"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "papermill": {
     "duration": 0.084384,
     "end_time": "2020-04-28T12:16:40.109530",
     "exception": false,
     "start_time": "2020-04-28T12:16:40.025146",
     "status": "completed"
    },
    "tags": []
   },
   "source": [
    "Data source: [Science Ministry](https://github.com/MinCiencia/Datos-COVID19)."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "papermill": {
     "duration": 0.083171,
     "end_time": "2020-04-28T12:16:40.275579",
     "exception": false,
     "start_time": "2020-04-28T12:16:40.192408",
     "status": "completed"
    },
    "tags": []
   },
   "source": [
    "# Evolution of daily confirmed cases by region"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 125,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:32.630112Z",
     "iopub.status.busy": "2020-04-28T12:16:32.629494Z",
     "iopub.status.idle": "2020-04-28T12:16:32.649508Z",
     "shell.execute_reply": "2020-04-28T12:16:32.648939Z"
    },
    "papermill": {
     "duration": 0.110939,
     "end_time": "2020-04-28T12:16:32.649626",
     "exception": false,
     "start_time": "2020-04-28T12:16:32.538687",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data_raw = pd.read_csv(\n",
    "    \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto3/CasosTotalesCumulativo_T.csv\",\n",
    "    index_col='Region')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 126,
   "metadata": {},
   "outputs": [],
   "source": [
    "#hide\n",
    "data_raw = data_raw.diff().fillna(0).T"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 127,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:32.819320Z",
     "iopub.status.busy": "2020-04-28T12:16:32.818663Z",
     "iopub.status.idle": "2020-04-28T12:16:32.820978Z",
     "shell.execute_reply": "2020-04-28T12:16:32.820464Z"
    },
    "papermill": {
     "duration": 0.089772,
     "end_time": "2020-04-28T12:16:32.821088",
     "exception": false,
     "start_time": "2020-04-28T12:16:32.731316",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data_raw = data_raw.drop(\"Total\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 128,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:32.993705Z",
     "iopub.status.busy": "2020-04-28T12:16:32.988020Z",
     "iopub.status.idle": "2020-04-28T12:16:33.523491Z",
     "shell.execute_reply": "2020-04-28T12:16:33.522359Z"
    },
    "papermill": {
     "duration": 0.619644,
     "end_time": "2020-04-28T12:16:33.523625",
     "exception": false,
     "start_time": "2020-04-28T12:16:32.903981",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data = pd.DataFrame()\n",
    "i = 0\n",
    "for date in data_raw.keys():\n",
    "    for n, region in enumerate(data_raw.index):\n",
    "        data[i] = date, region, data_raw[date].loc[region], n\n",
    "        i += 1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 129,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:33.701677Z",
     "iopub.status.busy": "2020-04-28T12:16:33.700563Z",
     "iopub.status.idle": "2020-04-28T12:16:33.705651Z",
     "shell.execute_reply": "2020-04-28T12:16:33.706168Z"
    },
    "papermill": {
     "duration": 0.100896,
     "end_time": "2020-04-28T12:16:33.706357",
     "exception": false,
     "start_time": "2020-04-28T12:16:33.605461",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "regiones = data_raw.reset_index()['index'].values\n",
    "data = data.T\n",
    "data = data.rename(columns={0: \"date\", 1: \"region\", 2: \"casos\", 3: \"codigo region\"})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 130,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:33.876387Z",
     "iopub.status.busy": "2020-04-28T12:16:33.875759Z",
     "iopub.status.idle": "2020-04-28T12:16:33.878181Z",
     "shell.execute_reply": "2020-04-28T12:16:33.878755Z"
    },
    "papermill": {
     "duration": 0.090828,
     "end_time": "2020-04-28T12:16:33.878888",
     "exception": false,
     "start_time": "2020-04-28T12:16:33.788060",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data[\"casos\"] = data[\"casos\"].astype(int)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 131,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:34.053128Z",
     "iopub.status.busy": "2020-04-28T12:16:34.048039Z",
     "iopub.status.idle": "2020-04-28T12:16:34.162754Z",
     "shell.execute_reply": "2020-04-28T12:16:34.163451Z"
    },
    "papermill": {
     "duration": 0.201012,
     "end_time": "2020-04-28T12:16:34.163626",
     "exception": false,
     "start_time": "2020-04-28T12:16:33.962614",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [
    {
     "data": {
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       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
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\"Tarapac\\u00e1\", \"casos\": 5, \"codigo region\": 1}, {\"date\": \"2020-04-28\", \"region\": \"Antofagasta\", \"casos\": 24, \"codigo region\": 2}, {\"date\": \"2020-04-28\", \"region\": \"Atacama\", \"casos\": 0, \"codigo region\": 3}, {\"date\": \"2020-04-28\", \"region\": \"Coquimbo\", \"casos\": 0, \"codigo region\": 4}, {\"date\": \"2020-04-28\", \"region\": \"Valpara\\u00edso\", \"casos\": 8, \"codigo region\": 5}, {\"date\": \"2020-04-28\", \"region\": \"Metropolitana\", \"casos\": 442, \"codigo region\": 6}, {\"date\": \"2020-04-28\", \"region\": \"O\\u2019Higgins\", \"casos\": 3, \"codigo region\": 7}, {\"date\": \"2020-04-28\", \"region\": \"Maule\", \"casos\": 21, \"codigo region\": 8}, {\"date\": \"2020-04-28\", \"region\": \"\\u00d1uble\", \"casos\": 6, \"codigo region\": 9}, {\"date\": \"2020-04-28\", \"region\": \"Biob\\u00edo\", \"casos\": 3, \"codigo region\": 10}, {\"date\": \"2020-04-28\", \"region\": \"Araucan\\u00eda\", \"casos\": 15, \"codigo region\": 11}, {\"date\": \"2020-04-28\", \"region\": \"Los R\\u00edos\", \"casos\": 0, \"codigo region\": 12}, {\"date\": \"2020-04-28\", \"region\": \"Los Lagos\", \"casos\": 0, \"codigo region\": 13}, {\"date\": \"2020-04-28\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-28\", \"region\": \"Magallanes\", \"casos\": 22, \"codigo region\": 15}, {\"date\": \"2020-04-29\", \"region\": \"Arica y Parinacota\", \"casos\": 4, \"codigo region\": 0}, {\"date\": \"2020-04-29\", \"region\": \"Tarapac\\u00e1\", \"casos\": 14, \"codigo region\": 1}, {\"date\": \"2020-04-29\", \"region\": \"Antofagasta\", \"casos\": 33, \"codigo region\": 2}, {\"date\": \"2020-04-29\", \"region\": \"Atacama\", \"casos\": 7, \"codigo region\": 3}, {\"date\": \"2020-04-29\", \"region\": \"Coquimbo\", \"casos\": 2, \"codigo region\": 4}, {\"date\": \"2020-04-29\", \"region\": \"Valpara\\u00edso\", \"casos\": 33, \"codigo region\": 5}, {\"date\": \"2020-04-29\", \"region\": \"Metropolitana\", \"casos\": 589, \"codigo region\": 6}, {\"date\": \"2020-04-29\", \"region\": \"O\\u2019Higgins\", \"casos\": 7, \"codigo region\": 7}, {\"date\": \"2020-04-29\", \"region\": \"Maule\", \"casos\": 8, \"codigo region\": 8}, {\"date\": \"2020-04-29\", \"region\": \"\\u00d1uble\", \"casos\": 14, \"codigo region\": 9}, {\"date\": \"2020-04-29\", \"region\": \"Biob\\u00edo\", \"casos\": 10, \"codigo region\": 10}, {\"date\": \"2020-04-29\", \"region\": \"Araucan\\u00eda\", \"casos\": 22, \"codigo region\": 11}, {\"date\": \"2020-04-29\", \"region\": \"Los R\\u00edos\", \"casos\": 2, \"codigo region\": 12}, {\"date\": \"2020-04-29\", \"region\": \"Los Lagos\", \"casos\": 4, \"codigo region\": 13}, {\"date\": \"2020-04-29\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-29\", \"region\": \"Magallanes\", \"casos\": 21, \"codigo region\": 15}, {\"date\": \"2020-04-30\", \"region\": \"Arica y Parinacota\", \"casos\": 7, \"codigo region\": 0}, {\"date\": \"2020-04-30\", \"region\": \"Tarapac\\u00e1\", \"casos\": 15, \"codigo region\": 1}, {\"date\": \"2020-04-30\", \"region\": \"Antofagasta\", \"casos\": 32, \"codigo region\": 2}, {\"date\": \"2020-04-30\", \"region\": \"Atacama\", \"casos\": 1, \"codigo region\": 3}, {\"date\": \"2020-04-30\", \"region\": \"Coquimbo\", \"casos\": 0, \"codigo region\": 4}, {\"date\": \"2020-04-30\", \"region\": \"Valpara\\u00edso\", \"casos\": 33, \"codigo region\": 5}, {\"date\": \"2020-04-30\", \"region\": \"Metropolitana\", \"casos\": 736, \"codigo region\": 6}, {\"date\": \"2020-04-30\", \"region\": \"O\\u2019Higgins\", \"casos\": 4, \"codigo region\": 7}, {\"date\": \"2020-04-30\", \"region\": \"Maule\", \"casos\": 1, \"codigo region\": 8}, {\"date\": \"2020-04-30\", \"region\": \"\\u00d1uble\", \"casos\": 7, \"codigo region\": 9}, {\"date\": \"2020-04-30\", \"region\": \"Biob\\u00edo\", \"casos\": 8, \"codigo region\": 10}, {\"date\": \"2020-04-30\", \"region\": \"Araucan\\u00eda\", \"casos\": 20, \"codigo region\": 11}, {\"date\": \"2020-04-30\", \"region\": \"Los R\\u00edos\", \"casos\": 7, \"codigo region\": 12}, {\"date\": \"2020-04-30\", \"region\": \"Los Lagos\", \"casos\": 6, \"codigo region\": 13}, {\"date\": \"2020-04-30\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-30\", \"region\": \"Magallanes\", \"casos\": 11, \"codigo region\": 15}, {\"date\": \"2020-05-01\", \"region\": \"Arica y Parinacota\", \"casos\": 18, \"codigo region\": 0}, {\"date\": \"2020-05-01\", \"region\": \"Tarapac\\u00e1\", \"casos\": 2, \"codigo region\": 1}, {\"date\": \"2020-05-01\", \"region\": \"Antofagasta\", \"casos\": 43, \"codigo region\": 2}, {\"date\": \"2020-05-01\", \"region\": \"Atacama\", \"casos\": 0, \"codigo region\": 3}, {\"date\": \"2020-05-01\", \"region\": \"Coquimbo\", \"casos\": 1, \"codigo region\": 4}, {\"date\": \"2020-05-01\", \"region\": \"Valpara\\u00edso\", \"casos\": 9, \"codigo region\": 5}, {\"date\": \"2020-05-01\", \"region\": \"Metropolitana\", \"casos\": 891, \"codigo region\": 6}, {\"date\": \"2020-05-01\", \"region\": \"O\\u2019Higgins\", \"casos\": 1, \"codigo region\": 7}, {\"date\": \"2020-05-01\", \"region\": \"Maule\", \"casos\": 1, \"codigo region\": 8}, {\"date\": \"2020-05-01\", \"region\": \"\\u00d1uble\", \"casos\": 0, \"codigo region\": 9}, {\"date\": \"2020-05-01\", \"region\": \"Biob\\u00edo\", \"casos\": 2, \"codigo region\": 10}, {\"date\": \"2020-05-01\", \"region\": \"Araucan\\u00eda\", \"casos\": 2, \"codigo region\": 11}, {\"date\": \"2020-05-01\", \"region\": \"Los R\\u00edos\", \"casos\": 0, \"codigo region\": 12}, {\"date\": \"2020-05-01\", \"region\": \"Los Lagos\", \"casos\": 14, \"codigo region\": 13}, {\"date\": \"2020-05-01\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-01\", \"region\": \"Magallanes\", \"casos\": 1, \"codigo region\": 15}, {\"date\": \"2020-05-02\", \"region\": \"Arica y Parinacota\", \"casos\": 10, \"codigo region\": 0}, {\"date\": \"2020-05-02\", \"region\": \"Tarapac\\u00e1\", \"casos\": 12, \"codigo region\": 1}, {\"date\": \"2020-05-02\", \"region\": \"Antofagasta\", \"casos\": 90, \"codigo region\": 2}, {\"date\": \"2020-05-02\", \"region\": \"Atacama\", \"casos\": 16, \"codigo region\": 3}, {\"date\": \"2020-05-02\", \"region\": \"Coquimbo\", \"casos\": 1, \"codigo region\": 4}, {\"date\": \"2020-05-02\", \"region\": \"Valpara\\u00edso\", \"casos\": 46, \"codigo region\": 5}, {\"date\": \"2020-05-02\", \"region\": \"Metropolitana\", \"casos\": 1145, \"codigo region\": 6}, {\"date\": \"2020-05-02\", \"region\": \"O\\u2019Higgins\", \"casos\": 11, \"codigo region\": 7}, {\"date\": \"2020-05-02\", \"region\": \"Maule\", \"casos\": 2, \"codigo region\": 8}, {\"date\": \"2020-05-02\", \"region\": \"\\u00d1uble\", \"casos\": 8, \"codigo region\": 9}, {\"date\": \"2020-05-02\", \"region\": \"Biob\\u00edo\", \"casos\": 22, \"codigo region\": 10}, {\"date\": \"2020-05-02\", \"region\": \"Araucan\\u00eda\", \"casos\": 19, \"codigo region\": 11}, {\"date\": \"2020-05-02\", \"region\": \"Los R\\u00edos\", \"casos\": 7, \"codigo region\": 12}, {\"date\": \"2020-05-02\", \"region\": \"Los Lagos\", \"casos\": 12, \"codigo region\": 13}, {\"date\": \"2020-05-02\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-02\", \"region\": \"Magallanes\", \"casos\": 26, \"codigo region\": 15}, {\"date\": \"2020-05-03\", \"region\": \"Arica y Parinacota\", \"casos\": 1, \"codigo region\": 0}, {\"date\": \"2020-05-03\", \"region\": \"Tarapac\\u00e1\", \"casos\": 60, \"codigo region\": 1}, {\"date\": \"2020-05-03\", \"region\": \"Antofagasta\", \"casos\": 61, \"codigo region\": 2}, {\"date\": \"2020-05-03\", \"region\": \"Atacama\", \"casos\": 8, \"codigo region\": 3}, {\"date\": \"2020-05-03\", \"region\": \"Coquimbo\", \"casos\": 10, \"codigo region\": 4}, {\"date\": \"2020-05-03\", \"region\": \"Valpara\\u00edso\", \"casos\": 24, \"codigo region\": 5}, {\"date\": \"2020-05-03\", \"region\": \"Metropolitana\", \"casos\": 995, \"codigo region\": 6}, {\"date\": \"2020-05-03\", \"region\": \"O\\u2019Higgins\", \"casos\": 5, \"codigo region\": 7}, {\"date\": \"2020-05-03\", \"region\": \"Maule\", \"casos\": 1, \"codigo region\": 8}, {\"date\": \"2020-05-03\", \"region\": \"\\u00d1uble\", \"casos\": 10, \"codigo region\": 9}, {\"date\": \"2020-05-03\", \"region\": \"Biob\\u00edo\", \"casos\": 8, \"codigo region\": 10}, {\"date\": \"2020-05-03\", \"region\": \"Araucan\\u00eda\", \"casos\": 14, \"codigo region\": 11}, {\"date\": \"2020-05-03\", \"region\": \"Los R\\u00edos\", \"casos\": 2, \"codigo region\": 12}, {\"date\": \"2020-05-03\", \"region\": \"Los Lagos\", \"casos\": 4, \"codigo region\": 13}, {\"date\": \"2020-05-03\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-03\", \"region\": \"Magallanes\", \"casos\": 25, \"codigo region\": 15}, {\"date\": \"2020-05-04\", \"region\": \"Arica y Parinacota\", \"casos\": 0, \"codigo region\": 0}, {\"date\": \"2020-05-04\", \"region\": \"Tarapac\\u00e1\", \"casos\": 23, \"codigo region\": 1}, {\"date\": \"2020-05-04\", \"region\": \"Antofagasta\", \"casos\": 20, \"codigo region\": 2}, {\"date\": \"2020-05-04\", \"region\": \"Atacama\", \"casos\": 3, \"codigo region\": 3}, {\"date\": \"2020-05-04\", \"region\": \"Coquimbo\", \"casos\": 3, \"codigo region\": 4}, {\"date\": \"2020-05-04\", \"region\": \"Valpara\\u00edso\", \"casos\": 18, \"codigo region\": 5}, {\"date\": \"2020-05-04\", \"region\": \"Metropolitana\", \"casos\": 872, \"codigo region\": 6}, {\"date\": \"2020-05-04\", \"region\": \"O\\u2019Higgins\", \"casos\": 6, \"codigo region\": 7}, {\"date\": \"2020-05-04\", \"region\": \"Maule\", \"casos\": 2, \"codigo region\": 8}, {\"date\": \"2020-05-04\", \"region\": \"\\u00d1uble\", \"casos\": 1, \"codigo region\": 9}, {\"date\": \"2020-05-04\", \"region\": \"Biob\\u00edo\", \"casos\": 3, \"codigo region\": 10}, {\"date\": \"2020-05-04\", \"region\": \"Araucan\\u00eda\", \"casos\": 3, \"codigo region\": 11}, {\"date\": \"2020-05-04\", \"region\": \"Los R\\u00edos\", \"casos\": 1, \"codigo region\": 12}, {\"date\": \"2020-05-04\", \"region\": \"Los Lagos\", \"casos\": 7, \"codigo region\": 13}, {\"date\": \"2020-05-04\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-04\", \"region\": \"Magallanes\", \"casos\": 18, \"codigo region\": 15}, {\"date\": \"2020-05-05\", \"region\": \"Arica y Parinacota\", \"casos\": 7, \"codigo region\": 0}, {\"date\": \"2020-05-05\", \"region\": \"Tarapac\\u00e1\", \"casos\": 27, \"codigo region\": 1}, {\"date\": \"2020-05-05\", \"region\": \"Antofagasta\", \"casos\": 51, \"codigo region\": 2}, {\"date\": \"2020-05-05\", \"region\": \"Atacama\", \"casos\": 8, \"codigo region\": 3}, {\"date\": \"2020-05-05\", \"region\": \"Coquimbo\", \"casos\": 6, \"codigo region\": 4}, {\"date\": \"2020-05-05\", \"region\": \"Valpara\\u00edso\", \"casos\": 31, \"codigo region\": 5}, {\"date\": \"2020-05-05\", \"region\": \"Metropolitana\", \"casos\": 1179, \"codigo region\": 6}, {\"date\": \"2020-05-05\", \"region\": \"O\\u2019Higgins\", \"casos\": 5, \"codigo region\": 7}, {\"date\": \"2020-05-05\", \"region\": \"Maule\", \"casos\": 9, \"codigo region\": 8}, {\"date\": \"2020-05-05\", \"region\": \"\\u00d1uble\", \"casos\": 2, \"codigo region\": 9}, {\"date\": \"2020-05-05\", \"region\": \"Biob\\u00edo\", \"casos\": 12, \"codigo region\": 10}, {\"date\": \"2020-05-05\", \"region\": \"Araucan\\u00eda\", \"casos\": 21, \"codigo region\": 11}, {\"date\": \"2020-05-05\", \"region\": \"Los R\\u00edos\", \"casos\": 0, \"codigo region\": 12}, {\"date\": \"2020-05-05\", \"region\": \"Los Lagos\", \"casos\": 1, \"codigo region\": 13}, {\"date\": \"2020-05-05\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-05\", \"region\": \"Magallanes\", \"casos\": 14, \"codigo region\": 15}, {\"date\": \"2020-05-06\", \"region\": \"Arica y Parinacota\", \"casos\": 3, \"codigo region\": 0}, {\"date\": \"2020-05-06\", \"region\": \"Tarapac\\u00e1\", \"casos\": 17, \"codigo region\": 1}, {\"date\": \"2020-05-06\", \"region\": \"Antofagasta\", \"casos\": 44, \"codigo region\": 2}, {\"date\": \"2020-05-06\", \"region\": \"Atacama\", \"casos\": 2, \"codigo region\": 3}, {\"date\": \"2020-05-06\", \"region\": \"Coquimbo\", \"casos\": 0, \"codigo region\": 4}, {\"date\": \"2020-05-06\", \"region\": \"Valpara\\u00edso\", \"casos\": 29, \"codigo region\": 5}, {\"date\": \"2020-05-06\", \"region\": \"Metropolitana\", \"casos\": 875, \"codigo region\": 6}, {\"date\": \"2020-05-06\", \"region\": \"O\\u2019Higgins\", \"casos\": 9, \"codigo region\": 7}, {\"date\": \"2020-05-06\", \"region\": \"Maule\", \"casos\": 0, \"codigo region\": 8}, {\"date\": \"2020-05-06\", \"region\": \"\\u00d1uble\", \"casos\": 2, \"codigo region\": 9}, {\"date\": \"2020-05-06\", \"region\": \"Biob\\u00edo\", \"casos\": 15, \"codigo region\": 10}, {\"date\": \"2020-05-06\", \"region\": \"Araucan\\u00eda\", \"casos\": 10, \"codigo region\": 11}, {\"date\": \"2020-05-06\", \"region\": \"Los R\\u00edos\", \"casos\": 1, \"codigo region\": 12}, {\"date\": \"2020-05-06\", \"region\": \"Los Lagos\", \"casos\": 16, \"codigo region\": 13}, {\"date\": \"2020-05-06\", \"region\": \"Ays\\u00e9n\", \"casos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-06\", \"region\": \"Magallanes\", \"casos\": 9, \"codigo region\": 15}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.HConcatChart(...)"
      ]
     },
     "execution_count": 131,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#hide_input\n",
    "input_dropdown = alt.binding_select(options=data['region'].unique())\n",
    "selection1 = alt.selection_single(fields=['region'], bind=input_dropdown, name=' ')\n",
    "selection2 = alt.selection_multi(fields=['region'], on='mouseover')\n",
    "color = alt.condition(selection1 | selection2,\n",
    "                    alt.Color('region:N', scale=alt.Scale(scheme='tableau20'), legend=None),\n",
    "                    alt.value('lightgray'))\n",
    "\n",
    "chart = alt.Chart(data).mark_bar().encode(\n",
    "    x=alt.X('date:O', axis=alt.Axis(title='Date')),\n",
    "    y=alt.Y('casos', axis=alt.Axis(title='Confirmed cases')),\n",
    "    color=color,\n",
    "    tooltip=['date', 'region', 'casos'],\n",
    "    order=alt.Order(\n",
    "    # Sort the segments of the bars by this field\n",
    "    'codigo region',\n",
    "    sort='descending'\n",
    "    )\n",
    ").properties(\n",
    "    title='COVID-19 in Chile: Daily confirmed cases by region'\n",
    ").add_selection(\n",
    "    selection1, selection2\n",
    ").transform_filter(\n",
    "    selection1\n",
    ")\n",
    "\n",
    "legend = alt.Chart(data).mark_point().encode(\n",
    "    y=alt.Y('region:N', axis=alt.Axis(orient='right'), sort=regiones),\n",
    "    color=color\n",
    ").add_selection(\n",
    "    selection1, selection2\n",
    ")\n",
    "\n",
    "chart.properties(width=600, height=400) | legend"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "papermill": {
     "duration": 0.084384,
     "end_time": "2020-04-28T12:16:40.109530",
     "exception": false,
     "start_time": "2020-04-28T12:16:40.025146",
     "status": "completed"
    },
    "tags": []
   },
   "source": [
    "Data source: [Science Ministry](https://github.com/MinCiencia/Datos-COVID19)."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Evolution of daily confirmed deaths by region"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 132,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:34.501390Z",
     "iopub.status.busy": "2020-04-28T12:16:34.500754Z",
     "iopub.status.idle": "2020-04-28T12:16:34.607378Z",
     "shell.execute_reply": "2020-04-28T12:16:34.606437Z"
    },
    "papermill": {
     "duration": 0.194542,
     "end_time": "2020-04-28T12:16:34.607572",
     "exception": false,
     "start_time": "2020-04-28T12:16:34.413030",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data = pd.DataFrame()\n",
    "data_raw = pd.read_csv(\n",
    "    \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto4/2020-03-24-CasosConfirmados-totalRegional.csv\",\n",
    "    index_col='Region')\n",
    "data['2020-03-24'] = data_raw['Fallecidos']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 133,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:34.779550Z",
     "iopub.status.busy": "2020-04-28T12:16:34.778883Z",
     "iopub.status.idle": "2020-04-28T12:16:34.781076Z",
     "shell.execute_reply": "2020-04-28T12:16:34.780561Z"
    },
    "papermill": {
     "duration": 0.090551,
     "end_time": "2020-04-28T12:16:34.781187",
     "exception": false,
     "start_time": "2020-04-28T12:16:34.690636",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "first_death_date = '2020-03-24'\n",
    "total_days = (pd.to_datetime(today)-pd.to_datetime(first_death_date)).days"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 134,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:34.955763Z",
     "iopub.status.busy": "2020-04-28T12:16:34.955128Z",
     "iopub.status.idle": "2020-04-28T12:16:38.267570Z",
     "shell.execute_reply": "2020-04-28T12:16:38.266653Z"
    },
    "papermill": {
     "duration": 3.402871,
     "end_time": "2020-04-28T12:16:38.267760",
     "exception": false,
     "start_time": "2020-04-28T12:16:34.864889",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "for i in np.arange(total_days+1):\n",
    "  date = (pd.to_datetime(first_death_date)+pd.DateOffset(i)).strftime('%Y-%m-%d')\n",
    "  s = \"https://raw.githubusercontent.com/MinCiencia/Datos-COVID19/master/output/producto4/\" + date + \"-CasosConfirmados-totalRegional.csv\"\n",
    "  data_by_date = pd.read_csv(s)\n",
    "  if 'Fallecidos' in data_by_date.columns:\n",
    "    data[date] = data_by_date[\"Fallecidos\"].values\n",
    "  elif 'Casos fallecidos' in data_by_date.columns:\n",
    "    data[date] = data_by_date[\"Casos fallecidos\"].values\n",
    "  else:\n",
    "    data[date] = data_by_date[\" Casos fallecidos\"].values"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 135,
   "metadata": {},
   "outputs": [],
   "source": [
    "#hide\n",
    "data = data.T.diff().fillna(0).T"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 136,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:38.444360Z",
     "iopub.status.busy": "2020-04-28T12:16:38.443550Z",
     "iopub.status.idle": "2020-04-28T12:16:38.445281Z",
     "shell.execute_reply": "2020-04-28T12:16:38.445820Z"
    },
    "papermill": {
     "duration": 0.094073,
     "end_time": "2020-04-28T12:16:38.446041",
     "exception": false,
     "start_time": "2020-04-28T12:16:38.351968",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data = data.drop(\"Total\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 137,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:38.623718Z",
     "iopub.status.busy": "2020-04-28T12:16:38.622846Z",
     "iopub.status.idle": "2020-04-28T12:16:38.957040Z",
     "shell.execute_reply": "2020-04-28T12:16:38.957547Z"
    },
    "papermill": {
     "duration": 0.427634,
     "end_time": "2020-04-28T12:16:38.957695",
     "exception": false,
     "start_time": "2020-04-28T12:16:38.530061",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "new_data = pd.DataFrame()\n",
    "i = 0\n",
    "for date in data.keys():\n",
    "    for n, region in enumerate(data.index):\n",
    "        new_data[i] = date, region, data[date].loc[region], n\n",
    "        i += 1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 138,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:39.139159Z",
     "iopub.status.busy": "2020-04-28T12:16:39.138494Z",
     "iopub.status.idle": "2020-04-28T12:16:39.144086Z",
     "shell.execute_reply": "2020-04-28T12:16:39.143563Z"
    },
    "papermill": {
     "duration": 0.097874,
     "end_time": "2020-04-28T12:16:39.144196",
     "exception": false,
     "start_time": "2020-04-28T12:16:39.046322",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "data = data.reset_index()\n",
    "regiones = data['Region'].values\n",
    "new_data = new_data.T\n",
    "new_data = new_data.rename(columns={0: \"date\", 1: \"region\", 2: \"fallecidos\", 3: \"codigo region\"})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 139,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:39.321415Z",
     "iopub.status.busy": "2020-04-28T12:16:39.320809Z",
     "iopub.status.idle": "2020-04-28T12:16:39.324018Z",
     "shell.execute_reply": "2020-04-28T12:16:39.323507Z"
    },
    "papermill": {
     "duration": 0.095476,
     "end_time": "2020-04-28T12:16:39.324127",
     "exception": false,
     "start_time": "2020-04-28T12:16:39.228651",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [],
   "source": [
    "#hide\n",
    "new_data[\"fallecidos\"] = new_data[\"fallecidos\"].astype(int)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 140,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2020-04-28T12:16:39.522109Z",
     "iopub.status.busy": "2020-04-28T12:16:39.506652Z",
     "iopub.status.idle": "2020-04-28T12:16:39.582068Z",
     "shell.execute_reply": "2020-04-28T12:16:39.582881Z"
    },
    "papermill": {
     "duration": 0.17631,
     "end_time": "2020-04-28T12:16:39.583116",
     "exception": false,
     "start_time": "2020-04-28T12:16:39.406806",
     "status": "completed"
    },
    "tags": []
   },
   "outputs": [
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\"Araucan\\u00eda\", \"fallecidos\": 1, \"codigo region\": 11}, {\"date\": \"2020-04-25\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-04-25\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-04-25\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-25\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}, {\"date\": \"2020-04-26\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-04-26\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-04-26\", \"region\": \"Antofagasta\", \"fallecidos\": 1, \"codigo region\": 2}, {\"date\": \"2020-04-26\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-04-26\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-04-26\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 0, \"codigo region\": 5}, {\"date\": \"2020-04-26\", \"region\": \"Metropolitana\", \"fallecidos\": 2, \"codigo region\": 6}, {\"date\": \"2020-04-26\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-04-26\", \"region\": \"Maule\", \"fallecidos\": 1, \"codigo region\": 8}, {\"date\": \"2020-04-26\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-04-26\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 1, \"codigo region\": 10}, {\"date\": \"2020-04-26\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 2, \"codigo region\": 11}, {\"date\": \"2020-04-26\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-04-26\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-04-26\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-26\", \"region\": \"Magallanes\", \"fallecidos\": 1, \"codigo region\": 15}, {\"date\": \"2020-04-27\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-04-27\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-04-27\", \"region\": \"Antofagasta\", \"fallecidos\": 0, \"codigo region\": 2}, {\"date\": \"2020-04-27\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-04-27\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-04-27\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 0, \"codigo region\": 5}, {\"date\": \"2020-04-27\", \"region\": \"Metropolitana\", \"fallecidos\": 4, \"codigo region\": 6}, {\"date\": \"2020-04-27\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-04-27\", \"region\": \"Maule\", \"fallecidos\": 1, \"codigo region\": 8}, {\"date\": \"2020-04-27\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-04-27\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 0, \"codigo region\": 10}, {\"date\": \"2020-04-27\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 3, \"codigo region\": 11}, {\"date\": \"2020-04-27\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-04-27\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-04-27\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-27\", \"region\": \"Magallanes\", \"fallecidos\": 1, \"codigo region\": 15}, {\"date\": \"2020-04-28\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-04-28\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-04-28\", \"region\": \"Antofagasta\", \"fallecidos\": 0, \"codigo region\": 2}, {\"date\": \"2020-04-28\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-04-28\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-04-28\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 1, \"codigo region\": 5}, {\"date\": \"2020-04-28\", \"region\": \"Metropolitana\", \"fallecidos\": 5, \"codigo region\": 6}, {\"date\": \"2020-04-28\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-04-28\", \"region\": \"Maule\", \"fallecidos\": 0, \"codigo region\": 8}, {\"date\": \"2020-04-28\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-04-28\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 1, \"codigo region\": 10}, {\"date\": \"2020-04-28\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 0, \"codigo region\": 11}, {\"date\": \"2020-04-28\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 1, \"codigo region\": 12}, {\"date\": \"2020-04-28\", \"region\": \"Los Lagos\", \"fallecidos\": 1, \"codigo region\": 13}, {\"date\": \"2020-04-28\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-28\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}, {\"date\": \"2020-04-29\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 1, \"codigo region\": 0}, {\"date\": \"2020-04-29\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-04-29\", \"region\": \"Antofagasta\", \"fallecidos\": 0, \"codigo region\": 2}, {\"date\": \"2020-04-29\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-04-29\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-04-29\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 2, \"codigo region\": 5}, {\"date\": \"2020-04-29\", \"region\": \"Metropolitana\", \"fallecidos\": 4, \"codigo region\": 6}, {\"date\": \"2020-04-29\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-04-29\", \"region\": \"Maule\", \"fallecidos\": 1, \"codigo region\": 8}, {\"date\": \"2020-04-29\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-04-29\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 0, \"codigo region\": 10}, {\"date\": \"2020-04-29\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 0, \"codigo region\": 11}, {\"date\": \"2020-04-29\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-04-29\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-04-29\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-29\", \"region\": \"Magallanes\", \"fallecidos\": 1, \"codigo region\": 15}, {\"date\": \"2020-04-30\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-04-30\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-04-30\", \"region\": \"Antofagasta\", \"fallecidos\": 1, \"codigo region\": 2}, {\"date\": \"2020-04-30\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-04-30\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-04-30\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 0, \"codigo region\": 5}, {\"date\": \"2020-04-30\", \"region\": \"Metropolitana\", \"fallecidos\": 6, \"codigo region\": 6}, {\"date\": \"2020-04-30\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-04-30\", \"region\": \"Maule\", \"fallecidos\": 0, \"codigo region\": 8}, {\"date\": \"2020-04-30\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-04-30\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 0, \"codigo region\": 10}, {\"date\": \"2020-04-30\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 3, \"codigo region\": 11}, {\"date\": \"2020-04-30\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-04-30\", \"region\": \"Los Lagos\", \"fallecidos\": 1, \"codigo region\": 13}, {\"date\": \"2020-04-30\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-04-30\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}, {\"date\": \"2020-05-01\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-05-01\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-05-01\", \"region\": \"Antofagasta\", \"fallecidos\": 2, \"codigo region\": 2}, {\"date\": \"2020-05-01\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-05-01\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-05-01\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 0, \"codigo region\": 5}, {\"date\": \"2020-05-01\", \"region\": \"Metropolitana\", \"fallecidos\": 4, \"codigo region\": 6}, {\"date\": \"2020-05-01\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-05-01\", \"region\": \"Maule\", \"fallecidos\": 0, \"codigo region\": 8}, {\"date\": \"2020-05-01\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-05-01\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 0, \"codigo region\": 10}, {\"date\": \"2020-05-01\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 1, \"codigo region\": 11}, {\"date\": \"2020-05-01\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-05-01\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-05-01\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-01\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}, {\"date\": \"2020-05-02\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-05-02\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-05-02\", \"region\": \"Antofagasta\", \"fallecidos\": 0, \"codigo region\": 2}, {\"date\": \"2020-05-02\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-05-02\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-05-02\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 1, \"codigo region\": 5}, {\"date\": \"2020-05-02\", \"region\": \"Metropolitana\", \"fallecidos\": 8, \"codigo region\": 6}, {\"date\": \"2020-05-02\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 2, \"codigo region\": 7}, {\"date\": \"2020-05-02\", \"region\": \"Maule\", \"fallecidos\": 0, \"codigo region\": 8}, {\"date\": \"2020-05-02\", \"region\": \"\\u00d1uble\", \"fallecidos\": 2, \"codigo region\": 9}, {\"date\": \"2020-05-02\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 0, \"codigo region\": 10}, {\"date\": \"2020-05-02\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 0, \"codigo region\": 11}, {\"date\": \"2020-05-02\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-05-02\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-05-02\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-02\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}, {\"date\": \"2020-05-03\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-05-03\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-05-03\", \"region\": \"Antofagasta\", \"fallecidos\": 0, \"codigo region\": 2}, {\"date\": \"2020-05-03\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-05-03\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-05-03\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 0, \"codigo region\": 5}, {\"date\": \"2020-05-03\", \"region\": \"Metropolitana\", \"fallecidos\": 13, \"codigo region\": 6}, {\"date\": \"2020-05-03\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-05-03\", \"region\": \"Maule\", \"fallecidos\": 0, \"codigo region\": 8}, {\"date\": \"2020-05-03\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-05-03\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 0, \"codigo region\": 10}, {\"date\": \"2020-05-03\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 0, \"codigo region\": 11}, {\"date\": \"2020-05-03\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-05-03\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-05-03\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-03\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}, {\"date\": \"2020-05-04\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-05-04\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-05-04\", \"region\": \"Antofagasta\", \"fallecidos\": 0, \"codigo region\": 2}, {\"date\": \"2020-05-04\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-05-04\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-05-04\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 0, \"codigo region\": 5}, {\"date\": \"2020-05-04\", \"region\": \"Metropolitana\", \"fallecidos\": 8, \"codigo region\": 6}, {\"date\": \"2020-05-04\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-05-04\", \"region\": \"Maule\", \"fallecidos\": 0, \"codigo region\": 8}, {\"date\": \"2020-05-04\", \"region\": \"\\u00d1uble\", \"fallecidos\": 1, \"codigo region\": 9}, {\"date\": \"2020-05-04\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 1, \"codigo region\": 10}, {\"date\": \"2020-05-04\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 0, \"codigo region\": 11}, {\"date\": \"2020-05-04\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-05-04\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-05-04\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-04\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}, {\"date\": \"2020-05-05\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 0, \"codigo region\": 0}, {\"date\": \"2020-05-05\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-05-05\", \"region\": \"Antofagasta\", \"fallecidos\": 0, \"codigo region\": 2}, {\"date\": \"2020-05-05\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-05-05\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-05-05\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 2, \"codigo region\": 5}, {\"date\": \"2020-05-05\", \"region\": \"Metropolitana\", \"fallecidos\": 3, \"codigo region\": 6}, {\"date\": \"2020-05-05\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-05-05\", \"region\": \"Maule\", \"fallecidos\": 0, \"codigo region\": 8}, {\"date\": \"2020-05-05\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-05-05\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 0, \"codigo region\": 10}, {\"date\": \"2020-05-05\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 0, \"codigo region\": 11}, {\"date\": \"2020-05-05\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-05-05\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-05-05\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-05\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}, {\"date\": \"2020-05-06\", \"region\": \"Arica y Parinacota\", \"fallecidos\": 1, \"codigo region\": 0}, {\"date\": \"2020-05-06\", \"region\": \"Tarapac\\u00e1\", \"fallecidos\": 0, \"codigo region\": 1}, {\"date\": \"2020-05-06\", \"region\": \"Antofagasta\", \"fallecidos\": 0, \"codigo region\": 2}, {\"date\": \"2020-05-06\", \"region\": \"Atacama\", \"fallecidos\": 0, \"codigo region\": 3}, {\"date\": \"2020-05-06\", \"region\": \"Coquimbo\", \"fallecidos\": 0, \"codigo region\": 4}, {\"date\": \"2020-05-06\", \"region\": \"Valpara\\u00edso\", \"fallecidos\": 1, \"codigo region\": 5}, {\"date\": \"2020-05-06\", \"region\": \"Metropolitana\", \"fallecidos\": 4, \"codigo region\": 6}, {\"date\": \"2020-05-06\", \"region\": \"O\\u2019Higgins\", \"fallecidos\": 0, \"codigo region\": 7}, {\"date\": \"2020-05-06\", \"region\": \"Maule\", \"fallecidos\": 0, \"codigo region\": 8}, {\"date\": \"2020-05-06\", \"region\": \"\\u00d1uble\", \"fallecidos\": 0, \"codigo region\": 9}, {\"date\": \"2020-05-06\", \"region\": \"Biob\\u00edo\", \"fallecidos\": 0, \"codigo region\": 10}, {\"date\": \"2020-05-06\", \"region\": \"Araucan\\u00eda\", \"fallecidos\": 0, \"codigo region\": 11}, {\"date\": \"2020-05-06\", \"region\": \"Los R\\u00edos\", \"fallecidos\": 0, \"codigo region\": 12}, {\"date\": \"2020-05-06\", \"region\": \"Los Lagos\", \"fallecidos\": 0, \"codigo region\": 13}, {\"date\": \"2020-05-06\", \"region\": \"Ays\\u00e9n\", \"fallecidos\": 0, \"codigo region\": 14}, {\"date\": \"2020-05-06\", \"region\": \"Magallanes\", \"fallecidos\": 0, \"codigo region\": 15}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.HConcatChart(...)"
      ]
     },
     "execution_count": 140,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#hide_input\n",
    "\n",
    "input_dropdown = alt.binding_select(options=new_data['region'].unique())\n",
    "selection1 = alt.selection_single(fields=['region'], bind=input_dropdown, name=' ')\n",
    "selection2 = alt.selection_multi(fields=['region'], on='mouseover')\n",
    "\n",
    "color = alt.condition(selection1 | selection2,\n",
    "                    alt.Color('region:N', scale=alt.Scale(scheme='tableau20'), legend=None),\n",
    "                    alt.value('lightgray'))\n",
    "\n",
    "bars = alt.Chart(new_data).mark_bar().encode(\n",
    "    x=alt.X('date:O', axis=alt.Axis(title='Date')),\n",
    "    y=alt.Y('fallecidos', axis=alt.Axis(title='Confirmed deaths')),\n",
    "    color=color,\n",
    "    tooltip=['date', 'region', 'fallecidos'],\n",
    "    order=alt.Order(\n",
    "    # Sort the segments of the bars by this field\n",
    "    'codigo region',\n",
    "    sort='descending'\n",
    "    )\n",
    "    ).properties(\n",
    "    title='COVID-19 in Chile: Daily confirmed deaths by region'\n",
    ").add_selection(\n",
    "    selection1, selection2\n",
    ").transform_filter(\n",
    "    selection1\n",
    ")\n",
    "\n",
    "legend = alt.Chart(new_data).mark_point().encode(\n",
    "    y=alt.Y('region:N', axis=alt.Axis(orient='right'), sort=regiones),\n",
    "    color=color\n",
    ").add_selection(\n",
    "    selection1, selection2\n",
    ")\n",
    "\n",
    "bars.properties(width=600, height=400) | legend"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "papermill": {
     "duration": 0.084384,
     "end_time": "2020-04-28T12:16:40.109530",
     "exception": false,
     "start_time": "2020-04-28T12:16:40.025146",
     "status": "completed"
    },
    "tags": []
   },
   "source": [
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